OK, so - in the Administration Panels (little man icon) and then Templates->Job Templates it seems that where that initial window is placed, it'll save it for EVERY job that uses the same Template.
Kind of obvious now, and I know how I jacked them up too. When we did the recent G7 Certs a few months back, I had to update the Templates on a PC with a smaller monitor since it was near the color guy's calibration setup.